Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs10422531 chr19:48256982 A/G 2.54E-7 108 5.1 22.37 14.18 KM Plot
LAML rs10423458 chr19:12530845 T/G 0.000126 111 6.13 21.27 13.1 KM Plot
LAML rs10423489 chr19:48278253 T/G 9.91E-8 108 5.6 22.37 12.17 KM Plot
LAML rs10424702 chr19:19508013 A/G 9.93E-5 111 16.3 9.1 0 KM Plot
LAML rs10424999 chr19:12537550 T/C 4.1E-6 110 5.62 22.37 13.1 KM Plot
LAML rs1043346 chr19:16244056 C/A 8.37E-5 109 16.23 7.13 0 KM Plot
LAML rs1043407 chr19:16244226 G/A 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs10444323 chr11:133811160 C/T 1.83E-9 110 13.1 17.82 0.52 KM Plot
LAML rs10466368 chr11:93229756 T/C 4.51E-5 107 6.13 15.17 16.3 KM Plot
LAML rs1047450 chr17:39550114 G/T 0.000111 111 13.2 19.23 0 KM Plot
LAML rs10488399 chr7:135652377 A/G 0.000119 111 0 27.4 15.17 KM Plot
LAML rs10496429 chr2:109891788 C/G 0.000133 111 7.07 19.23 22.37 KM Plot
LAML rs10497398 chr2:174129804 T/C 0.000167 109 16.23 11.67 0 KM Plot
LAML rs10503487 chr8:13968625 A/C 0.000166 109 16.17 13.2 0 KM Plot
LAML rs1050565 chr17:28576076 C/T 0.000101 111 6.1 16.17 19.33 KM Plot